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[ Source: prime-phylo  ]

Package: prime-phylo (1.0.11-9 and others)

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bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

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Architecture Version Package Size Installed Size Files
i386 1.0.11-9+b1 867.4 kB3,131.0 kB [list of files]