Package: clustalw (2.1+lgpl-7)

Links for clustalw

Debian Resources:

Download Source Package clustalw:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Charles Plessy (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [www.clustal.org]

Similar packages:

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, interface::commandline, User Interface: Text-based Interactive, Role: role::program, scope::utility, Purpose: Comparing, Supports Format: works-with-format::plaintext, works-with::TODO

Other Packages Related to clustalw

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.0) [not armel, armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

sug: clustalx

Multiple alignment of nucleic acid and protein sequences (graphical interface)
sug: seaview

Multiplatform interface for sequence alignment and phylogeny

enh: bioperl-run

BioPerl wrappers: scripts
enh: emboss

European molecular biology open software suite
enh: t-coffee

Multiple Sequence Alignment

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Architecture	Package Size	Installed Size	Files
amd64	275.1 kB	787.0 kB	[list of files]
arm64	241.9 kB	710.0 kB	[list of files]
armel	240.2 kB	718.0 kB	[list of files]
armhf	249.6 kB	542.0 kB	[list of files]
i386	294.8 kB	834.0 kB	[list of files]
mips64el	259.1 kB	941.0 kB	[list of files]
mipsel	258.4 kB	912.0 kB	[list of files]
ppc64el	276.5 kB	918.0 kB	[list of files]
s390x	247.5 kB	794.0 kB	[list of files]