Package: ruby-fix-trinity-output (1.0.0-2)

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Homepage [rubygems.org]

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Fix output fastq files from trinityrnaseq

trinityrnaseq outputs fastq files that have been 'corrected'

Unfortunately these files are no longer properly paired and therefore can't be used in most aligners such as bowtie2 and snap-aligner. This script attempts to fix that and produce 2 properly paired fastq files and a fastq file containing single reads

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dep: ruby

Interpreter of object-oriented scripting language Ruby (default version)

or ruby-interpreter

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dep: ruby-trollop (>= 2.0)

command-line argument processing library

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