[ Source: ampliconnoise ]
Package: ampliconnoise (1.29-10 and others)
Links for ampliconnoise
Debian Resources:
Download Source Package ampliconnoise:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Tim Booth (QA Page)
- Andreas Tille (QA Page)
- Pranav Ballaney (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:
Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences
Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.
Other Packages Related to ampliconnoise
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
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- dep: libopenmpi3 (>= 4.1.4)
- high performance message passing library -- shared library
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- dep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: openmpi-bin
- high performance message passing library -- binaries
Download ampliconnoise
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| i386 | 1.29-10+b2 | 1,079.4 kB | 2,000.0 kB | [list of files] |