Пакет: bio-eagle (2.4.1-3 и други)

Връзки за bio-eagle

Ресурси за Debian:

Изтегляне на пакет-източник bio-eagle.

Отговорници:

Външни препратки:

Начална страница [data.broadinstitute.org]

Подобни пакети:

Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Етикети: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: Analysing

Други пакети, свързани с bio-eagle

зависимости

препоръчани

предложени

enhances

dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libboost-program-options1.83.0 (>= 1.83.0)

program options library for C++
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 3.0) [amd64]

GCC support library

dep: libgcc-s1 (>= 4.2) [i386]
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libopenblas0

Optimized BLAS (linear algebra) library (meta)
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3

rec: med-config (>= 2.1)

Debian Med general config package

sug: bio-eagle-examples

Examples for bio-eagle

Изтегляне на bio-eagle

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	2.4.1-3+b3	227,5 кБ	654,0 кБ	[списък на файловете]
i386	2.4.1-3+b3	253,1 кБ	697,0 кБ	[списък на файловете]